M. Iwaoka, S. Tomoda, 'The SAAP Force Field. A Simple Approach to a New All-Atom Protein Force Field by Using Single Amino Acid Potential (SAAP) Functions in Various Solvents.' J. Comput. Chem., 2003, 24, 1192-1200.
M. Iwaoka, N. Kimura, D. Yosida, T. Minezaki, 'The SAAP Force Field. Development of the Single Amino Acid Potentials for Twenty Proteinogenic Amino Acids and Monte Carlo Molecular Simulation for Short Peptides.' J. Comput. Chem., 2009, 30, 2039-2055.
M. Iwaoka, T. Suzuki, Y. Shoji, K. Dedachi, T. Shimosato, T. Minezaki, H. Hojo, H. Onuki, H. Hirota, 'Development of SAAP3D Force Field and the Application to Replica-Exchange Monte Carlo Simulation for Chignolin and C-Peptide.' J. Comput. Aided Mol. Design, 2017, 31, 1039-1052.
M. Iwaoka, K. Yoshida, T. Shimosato, 'Application of a Distance-Dependent Sigmoidal Dielectric Constant to the REMC/SAAP3D Simulations of Chignolin, Trp-Cage, and the G10q Mutant.' The Protein J, 2020, 39, 402-410.
Related articles
M. Iwaoka, D. Yosida, N. Kimura, 'Importance of the Single Amino Acid Potential in Water for Secondary and Tertiary Structures of Proteins.' J. Phys. Chem. B, 2006, 110, 14475-14482.
K. Dedachi, T. Shimosato, T. Minezaki, M. Iwaoka, 'Toward Structure Prediction for Short Peptides Using the Improved SAAP Force Field Parameters.' J. Chem., 2013, Article ID 407862, 13 pages.
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